Uploading Runs BaseSpace™ Command Line Interface CLI











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With the release of version 1.2.0 of the BaseSpace™ Sequence Hub Command Line Interface (CLI) tool, users can now upload runs to BaseSpace™ Sequence Hub after sequencing has already completed. This tutorial covers setting proper permissions and using BaseSpace CLI to upload a run to your BaseSpace™ account. For more information and help getting started with BaseSpace™ CLI, see the links below: • Getting Started - BaseSpace™ Command Line Interface (CLI):    • Getting Started - BaseSpace™ Command ...   • Support Bulletin - How to use BaseSpace™ Command Line Interface (CLI) to upload run folders to BaseSpace Sequence Hub: https://support.illumina.com/bulletin... • BaseSpace™ CLI Overview: https://developer.basespace.illumina.... • BaseSpace™ CLI Example Commands: https://developer.basespace.illumina.... • Direct Download Links: • Linux: https://api.bintray.com/content/bases...\\$latest/amd64-linux/bs?bt_package=latest • Mac OS: https://api.bintray.com/content/bases...\\$latest/amd64-osx/bs?bt_package=latest • Windows: https://api.bintray.com/content/bases...\\$latest/amd64-windows/bs.exe?bt_package=latest • The methods and tools depicted in this video are for research use only and not for use in diagnostic procedures. • ©2020 Illumina, Inc. All Rights Reserved. • QB #10284 • Subscribe to the Illumina video channel http://www.youtube.com/subscription_c... • • A global genomics leader, Illumina provides comprehensive next-generation sequencing solutions to the research, clinical, and applied markets. Illumina technology is responsible for generating more than 90% of the world’s sequencing data.* Through collaborative innovation, Illumina is fueling groundbreaking advancements in oncology, reproductive health, genetic disease, microbiology, agriculture, forensic science, and beyond. • • *Data calculations on file. Illumina, Inc., 2015. • • View customer spotlight videos •    • Illumina Customer Testimonials   • • View Illumina webinars •    • Webinars   • • View Illumina product videos •    • Playlist   • • View Illumina support videos •    • Illumina Support  

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