Youtor
46 Lockdown Learning Bioinformaticsalong SAMTools
>> YOUR LINK HERE: ___ http://youtube.com/watch?v=Llaxuzr6EkA
Countdown: 0:00 • Introduction: 2:35 • Install SAMTools: 5:30 • samtools view: 13:46 • Alignments and Pipes: 25:04 • samtools sort: 42:26 • samtools index: 53:13 • samtools flags: 58:52 • samtools flagstat: 1:01:00 • In lesson #46 we introduce SAMTools, for manipulating SAM files (including compression via SAM - BAM conversion). • Walk through a practical introduction to bioinformatics skills with me while working from home during the Covid-19 pandemic. Aimed at wet-lab types who want to take this unique and strange opportunity to begin learning some bioinformatics. • I am going to begin at the beginning and take it nice and slow. Our first aim will be to develop the skills required to analyse and visualise a (covid-relevant) RNA-Seq dataset.
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