Sequence alignment in Python and with no intermediate files

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http://youtube.com/watch?v=_cTbADrGLCQ

Here I show you how to align sequences in Python all while using STDOUT and STDIN so no files need to be written and everything is done in RAM. • I use mafft as the aligner, but I supply the sequences as a python object and read the alignment as a python object. I show global alignment, but the same principles can be used with other aligners and for other purposes. • Notebook: • https://github.com/mousepixels/sanbom...

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