Batch Processing Morphometric Analysis With ImageJ











>> YOUR LINK HERE: ___ http://youtube.com/watch?v=hnxr-4Q5Ojg

We use macros in ImageJ to automate the morphometric analysis process. • Here is the macro that I used in the video • run( 8-bit ); • run( Auto Threshold , method=RenyiEntropy ); • setOption( BlackBackground , false); • run( Dilate ); • run( Fill Holes ); • run( Erode ); • //setTool( wand ); • doWand(2560, 400); • floodFill(2468, 472); • run( Select None ); • run( Analyze Particles... , size=1.49-Infinity show=Outlines display exclude clear summarize ); • Exercise files • https://www.dropbox.com/sh/uzw5w0mkvp... • Work cited • Schindelin, J.; Arganda-Carreras, I. Frise, E. et al. (2012), Fiji: an open-source platform for biological-image analysis , Nature methods 9(7): 676-682, PMID 22743772 (on Google Scholar). • http://ezvid.com

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