AutoDock Vina Tutorial

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>> COPY / PASTE LINK PLEASE 🎵 MP3 <<

>> YOUR LINK HERE: ___ http://youtube.com/watch?v=rBEKZQ22nhs

This is a video tutorial on small organic molecule docking and virtual screening using AutoDock Vina. Here I discuss the protocol and how to use AutoDock Vina using my setup. • I made the mistake of referring to the value of the binding between the receptor and the ligand as binding while I was supposed to use the term affinity , apologies I did not rehearse the video and only realised my mistakes after editing and watching the video. • 00:00:00 Intro • 00:02:18 Setup • 00:05:45 Clean structure • 00:06:26 Convert to .pdbqt • 00:11:52 Identify the search box • 00:20:19 ZINC15 ligand download and convert to .pdbqt • 00:29:55 Segment ligands • 00:35:15 PBS HPC job file • 00:42:34 Download AutoDock Vina • 00:44:45 Run docking on a local computer • You can find the AutoDock.py script here: https://github.com/sarisabban/Notes/b...

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