SmithWaterman Algorithm — Stepbystep Explanations

>> YOUR LINK HERE: ___ http://youtube.com/watch?v=te_csPu5lmM

Smith-Waterman algorithm is a dynamic programming approach used to solve pairwise local sequence alignment. It involves computing a two-dimensional (2D) matrix using the match, mismatch, and gap penalty scores. Solving the matrix consist of three stages: (1) initialization, (2) matrix filling, and (3) traceback. Temple Ferris Smith and Michael Spencer Waterman introduced this algorithm during the year 1981. • This video tutorial contains step-by-step explanations to solve Smith-Waterman algorithm. For the matrix filling stage, I have chosen BABA (Basic Algorithms of Bioinformatics Applet) Java applet program for formula calculations and traceback. The BABA tool can be freely downloaded from SourceForge (https://sourceforge.net/projects/baba/). • Alterative Source: https://biogem.org/downloads/software... • Command-line: java -jar baba.jar • --------------------------------------------------------------------------------------- • My Blog: https://www.biob.in • Website: http://www.biogem.org • My Vlog: / ashokkumarbioit • YouTube Handle: / @akbit • My GitHub: https://github.com/AshokHub • --------------------------------------------------------------------------------------- • Background Music: • ► Music By Scandinavianz - Coco Islands : / ... • ► Music provided by NCS BEST OF : • Video • #BioGem #biogem.org #BioBIN #biob.in #Bioinformatics #AKBIT #Sequence_Alignment #Smith-Waterman #BABA #SourceForge

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