Mage Beginner Guide Overview amp Builds for ALL Specs WoW Shadowlands

YOUR LINK HERE:

http://youtube.com/watch?v=xS4r2bLATvo

1:20 - (1) The NAMD tutorial files • 4:17 - (2) Running Ubuntu on VirtualBox (included because my Mac is running Catalina, which breaks standard VMD distributions) • 6:23 - (3) Preparing simulation files for NAMD using VMD • 15:34 - (4) Viewing Molecules in VMD • 16:53 - (5) Using Tk Console to generate a PDB file • 23:15 - (6) Using VMD script to create a psf file • 36:26 - (7) Solvating the protein in a water sphere • 45:07 - (8) Visually inspecting the solvated protein using VMD • 50:15 - (9) Using .conf script files to control NAMD • 1:03:19 - (10) Transferring files to the high performance computing cluster • 1:13:18 - (11) Editing files on the computing cluster servers with vi • 1:19:30 - (12) Running the NAMD simulation on the hpc server • 1:40:34 - (13) Visualizing the NAMD simulation data with VMD • Helpful links: • 1) Get NAMD - https://www.ks.uiuc.edu/Development/D... • 2) Get VMD - https://www.ks.uiuc.edu/Development/D... • 3) NAMD tutorial with supporting files - http://www.ks.uiuc.edu/Training/Tutor... • 4) Requesting an interactive node with Slurm - https://hpc-uit.readthedocs.io/en/lat... • 5) Great video on using vim - • Vim Basics in 8 Minutes • 6) Place to download Charmm forcefields (not needed in video, but good to have handy) - http://mackerell.umaryland.edu/charmm... • Grazioli Research Group website - http://gianmarc.com/

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