Youtor
Bioinformatics How to read FASTA files with Python and Biopython Tutorial
YOUR LINK HERE:
http://youtube.com/watch?v=yj3qld0J5EY
How to solve Rosalind Bioinformatics of reading FASTA files using Python and Biopython? In this Bioinformatics for beginners tutorial with Python video I am going to show you how to read and parse FASTA files using Biopython. We will see what exactly FASTA file is, and how to read it using parse() functionality. Then we are also going to show SimpleFastaParser which offers faster reading of sequence files and do performance comparison between these two methods. • Chapters: • 0:00 Intro • 0:09 What is Biopython? • 0:43 What is FASTA file format? • 1:20 Biopython SeqIO package • 1:55 Biopython parse() • 2:16 Working with big FASTA files • 3:02 parse vs SimpleFastaParser • 3:33 Exercise • 4:08 Outro • You can find code and Medium article connected to Reading FASTA files here: • Github code: https://github.com/lanacaldarevic/ros... • Medium article: / bioinformatics-101-reading-fasta-files-usi... • My channel is aimed at everyone interested in Computer Science applications in biology. The mission is to simplify Bioinformatics concepts, one video at a time! Stay productive! • Follow me on Twitter: / lana_caldarevic
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